PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243495.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 359aa    MW: 40330.7 Da    PI: 6.6287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243495.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.5e-2512420620100
                     HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
              B3  20 kkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                     k++ae++    gg+  ++  l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ ++++ +l+++++r+s
  XP_008243495.1 124 KQHAEKYvplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERRRSHTDRLFIGWRRRS 206
                     8999999**97666..5679************************************************88779999******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-29100213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-21104206IPR015300DNA-binding pseudobarrel domain
CDDcd100174.27E-17106195No hitNo description
SMARTSM010193.0E-14108206IPR003340B3 DNA binding domain
PfamPF023622.5E-21124206IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294142206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSINHFSSDH PETQWWPNTA HQQQQDPSRP HFLPQFYQDT HHQNYQAWLN SQEQPTPMSP  60
TPPTPTTLNF NLNQNDAESD HANQLQHQLL LQSSPPLDDH DEENEPMFEK PLTPXXXXXX  120
XSXKQHAEKY VPLGGGDSGL LLSFEDESGK SWRFRYSYWN SSQSYVLTKG WSRYVKEKRL  180
DAGDVVLFER RRSHTDRLFI GWRRRSAAAT PPSGGAGESS GSGSAGGWTR MFYSAPHHNN  240
NDGGSSYPAH QYHNHSVAPY PPDCLHAAGS GVQSMSQTTS SVGSSKTLRL FGVNLECQQQ  300
ADHESEPSTP DGSSSLSMSS SQGPTPHHHL YPRAAYDYGA DQRDFSFSRD GNPMRNRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-3210521411126DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-55AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243495.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein At2g36080-like
TrEMBLM5VSV70.0M5VSV7_PRUPE; Uncharacterized protein
STRINGVIT_08s0007g02810.t014e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-39B3 family protein